Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g hg38 -z /Data/DataBases/hg38/hg38_canonic.fa -p /Data/DataBases/hg38/hg38_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_hg38.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5099905/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  100,336,065
 Normal Paired: 99,102,576 (98.77%)
 Chimeric Paired: 4,859 (0.00%)
 Chimeric Ambiguous: 1,241 (0.00%)
 Unmapped: 1,227,389 (1.22%)
 Ligation Motif Present: 7,745 (0.01%)
Alignable (Normal+Chimeric Paired): 99,107,435 (98.78%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-08-29T18:59:44,003]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 29,110,536 (29.01%)
PCR Duplicates: 69,996,899 (69.76%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 30,253,618
Intra-fragment Reads: 16,938,215 (16.88% / 58.19%)
Below MAPQ Threshold: 2,357,395 (2.35% / 8.10%)
Hi-C Contacts: 9,814,926 (9.78% / 33.72%)
 Ligation Motif Present: 2,228  (0.00% / 0.01%)
 3' Bias (Long Range): 84% - 16%
 Pair Type %(L-I-O-R): 26% - 25% - 25% - 25%
Inter-chromosomal: 2,885,772  (2.88% / 9.91%)
Intra-chromosomal: 6,929,154  (6.91% / 23.80%)
Short Range (<20Kb): 4,930,630  (4.91% / 16.94%)
Long Range (>20Kb): 1,998,474  (1.99% / 6.87%)